Study Identified Summary of study Brief SRA description Manuscript title
DRP000768 phosphate starvation in roots and shoots Transcriptome profiles of wheat variety Chinese Spring (CS) in response to Pi starvation (−P) for 10 days. Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat
ERP003465 fusarium head blight infected spikelets Near isogenic wheat lines, differing in the presence of the Fusarium graminearum FHB-resistance QTL Fhb1 and Qfhs.ifa-5A, under disease pressure (30 and 50 hai) as well as with mock-inoculation Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.)
ERP004505 grain tissue-specific developmental timecourse Analysis of the cell type specific expression of homeologous genes in the developing wheat grain Genome interplay in the grain transcriptome of hexaploid bread wheat
SRP004884 flag leaf downregulation of GPC Wild type bread wheat plants and GPC RNAi plants 12 days after anthesis Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence
SRP013449 grain tissue-specific developmental timecourse Transcriptomes of the aleurone and starchy endosperm tissues of the wheat seed (Triticum aestivum) at time points critical to the development of the aleurone layer of 6, 9 and 14 days post anthesis. Gene expression in the developing aleurone and starchy endosperm of wheat
SRP017303 Stripe rust infected seedlings Pool of stripe rust infected wheat leaves Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors
SRP022869 Septoria tritici infected seedlings Molecular mechanisms underlying the interplay between fungal pathogenicity and host responses at specific growth phases and the factors triggering disease transition. Transcriptional Reprogramming of Wheat and the Hemibiotrophic Pathogen Septoria tritici during Two Phases of the Compatible Interaction
SRP028357 shoots and leaves of nulli tetra group 1 and group 5 RNAseq of nulli-tetrasomic wheat lines (shoots and leaves) Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
SRP029372 grain tissue-specific developmental timecourse Gene expression profiling of morphological stage of developing wheat grain Evaluation of Assembly Strategies Using RNA-Seq Data Associated with Grain Development of Wheat (Triticum aestivum L.)
SRP038912 comparison of stamen, pistil and pistilloidy expression Transcriptional profiling of pistillody stamen, pistil and stamen in wheat line HTS-1 Pistillody mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.)
SRP041017 stripe rust and powdery mildew timecourse of infection in seedlings Transcriptome Divergence and Overlap for Wheat in Response to Stripe rust and Powdery Mildew Pathogen Stress Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew.
SRP041022 developmental time-course of synthetic hexaploid RNAseq of three tissues of nascent allohexaploid wheat and its following generations, their progenitors, and Chinese Spring mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat
ERP008767 grain tissue-specific expression at 12 days post anthesis Inner pericarp, outer pericarp and endosperm layers from developing grain of bread wheat cv. Holdfast at 12 days post-anthesis. Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family
SRP045409 drought and heat stress time-course in seedlings RNAseq of 1-week old wheat seedling leaves subjected to drought stress, heat stress and their combination before (0h) and after stress (1h or 6h) Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)
INRA-RNAseq (ERP004714) developmental time-course of Chinese Spring Whole transcriptome sequencing of wheat 3B chromosome Structural and functional partitioning of bread wheat chromosome 3B
SRP056412 grain developmental timecourse with 4A dormancy QTL This study was to identify candidate genes underlying the 4AL QTL for grain dormancy in wheat. RNA was sequenced from pooled NILs segregating for the QTL Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL


If you use expVIP please cite the following paper:

Philippa Borrill, Ricardo Ramirez-Gonzalez, and Cristobal Uauy expVIP: a customisable RNA-seq data analysis and visualisation platform Plant Physiology 2016 : pp.15.01667v1-pp.01667.2015.


One or two genes

Gene set

Examples: TraesCS2A01G272800 | TraesCS1A01G133400 | TraesCS2A01G272800.1 | TraesCS1A01G133400.1

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